Intermediary metabolism is the name given to the sequences of biochemical reactions that degrade, synthesize, or interconvert small molecules inside living cells. Knowledge of the core metabolic pathways and their interrelations is critical to understanding both normal function and the metabolic basis of most human diseases. Rational interpretation and application of data from the clinical chemistry laboratory also requires a sound grasp of the major metabolic pathways. Furthermore, knowledge of key biochemical reactions in the two dozen or so core metabolic pathways in humans is essential for an understanding of the molecular basis of drug action, drug interactions, and the many genetic diseases that are caused by the absence of the activity of a particular protein or enzyme.
1.1.1 Metabolic Pathways
Metabolism occurs in small discrete steps, each of which is catalyzed by an enzyme. The term metabolic pathway refers to a particular set of reactions that carries out a certain function or functions. The pathway of gluconeogenesis or glucose synthesis, for example, operates mainly during a period of fasting, and its primary function is to maintain the concentration of glucose in the circulation at levels that are required by glucose-dependent tissues such as the brain and red blood cells. Another example of a metabolic pathway is the tricarboxylic acid (TCA) cycle, which oxidizes the two carbons of acetyl-coenzyme A (acetyl-CoA) to C[O.sub.2] and water, thus completing the catabolism of carbohydrates, fats (fatty acids), and proteins (amino acids).
1.1.2 Metabolic Intermediates
Biochemical pathways are comprised of organic compounds called metabolic intermediates, all of which contain carbon, hydrogen, and oxygen. Some metabolic intermediates also contain nitrogen or sulfur. In most instances, these compounds themselves have no function. An exception would be a compound such as citric acid, which is both an intermediate in the TCA cycle and a key regulator of other pathways, including oxidation of glucose (glycolysis) and gluconeogenesis.
Homeostasis refers to an organism's tendency or drive to maintain the normalcy of its internal environment, including maintaining the concentration of nutrients and metabolites within relatively strict limits. A good example is glucose homeostasis. In the face of widely varying physiological conditions, such as fasting or exercise, both of which tend to lower blood glucose, or following the consumption of a carbohydrate meal that raises the blood glucose concentration, the human body activates hormonal mechanisms that operate to maintain blood glucose within rather narrow limits, 80 to 100 mg/dL (Fig. 1-1). Hypoglycemia (low blood glucose) stimulates the release of gluconeogenic hormones such as glucagon and hydrocortisone, which promote the breakdown of liver glycogen and the synthesis of glucose in the liver (gluconeogenesis), followed by the release of glucose into the blood. On the other hand, hyperglycemia (elevated blood glucose) stimulates the release of insulin, which promotes the uptake of glucose and its utilization, storage as glycogen, and conversion to fat.
Maintenance of the blood calcium concentration between strict limits is another example of homeostasis. The normal total plasma calcium concentration is in the range 8.0 to 9.5 mg/dL. If the calcium concentration remains above the upper limit of normal for an extended period of time, calcium may deposit, with pathological consequences in soft tissues such as the heart and pancreas. Hypocalcemia (a.k.a. tetany) can result in muscle paralysis, convulsions, and even death; chronic hypocalcemia causes rickets in children and osteomalacia in adults. The body uses vitamin D and certain hormones (e.g., parathyroid hormone, calcitonin) to maintain calcium homeostasis.
1.2 WHAT DO METABOLIC PATHWAYS ACCOMPLISH?
1.2.1 Generation of Energy
The primary dietary fuels for human beings are carbohydrates and fats (triacylglycerols). The human body also obtains energy from dietary protein and-for some people-ethanol. Metabolism of these fuels generates energy, much of which is captured as the high-energy molecule adenosine triphosphate (ATP) (Fig. 1-2). The ATP can be used for biosynthetic processes (e.g., protein synthesis), muscle contraction, and active transport of ions and other solutes across membranes.
1.2.2 Degradation or Catabolism of Organic Molecules
Catabolic pathways usually involve cleavage of C-O, C-N, or C-C bonds. Most intracellular catabolic pathways are oxidative and involve transfer of reducing equivalents (hydrogen atoms) to nicotinamide-adenine dinucleotide ([NAD.sup.+]) or flavine-adenine dinucleotide (FAD). The reducing equivalents in the resulting NADH or [FADH.sub.2] can then be used in biosynthetic reactions or transferred to the mitochondrial electron-transport chain for generation of ATP.
18.104.22.168 Digestion. Before dietary fuels can be absorbed into the body, they must be broken down into simpler molecules. Thus, starch is hydrolyzed to yield glucose, and proteins are hydrolyzed to their constituent amino acids.
22.214.171.124 Glycolysis. Glycolysis is the oxidation of glucose into the three-carbon compound pyruvic acid.
126.96.36.199 Fatty Acid Oxidation. The major route of fatty acid degradation is ß-oxidation, which accomplishes stepwise two-carbon cleavage of fatty acids into acetyl-CoA.
188.8.131.52 Amino Acid Catabolism. Breakdown of most of the 20 common amino acids is initiated by removal of the [alpha]-amino group of the amino acid via transamination. The resulting carbon skeletons are then further catabolized to generate energy or are used to synthesize other molecules (e.g., glucose, ketones). The nitrogen atoms of amino acids can be utilized for the synthesis of other nitrogenous compounds, such as heme, purines, and pyrimidines. Excess nitrogen is excreted in the form of urea.
1.2.3 Synthesis of Cellular Building Blocks and Precursors of Macromolecules 184.108.40.206 Gluconeogenesis: Synthesis of Glucose. This pathway produces glucose from glycerol, pyruvate, lactate, and the carbon skeletons of certain (glucogenic) amino acids. Gluconeogenesis is crucial to maintaining an adequate supply of glucose to the brain during fasting and starvation.
220.127.116.11 Synthesis of Fatty Acids. Excess dietary carbohydrates and the carbon skeletons of ketogenic amino acids are catabolized to acetyl-CoA, which is then utilized for the synthesis of long-chain (C16 and C18) fatty acids. Storage of these fatty acids as adipocyte triacylglycerols provides the major fuel source during the fasted state.
18.104.22.168 Synthesis of Heme. Heme is a component of the oxygen-binding proteins hemoglobin and myoglobin. Heme also functions as part of cytochromes, both in the mitochondrial electron transport chain involved in respiration-dependent ATP synthesis and in certain oxidation-reduction enzymes, such as the microsomal mixed-function oxygenases (e.g., cytochrome P450). Although most heme synthesis occurs in hemopoietic tissues (e.g., bone marrow), nearly all cells of the body synthesize heme for their own cytochromes and heme-containing enzymes.
1.2.4 Storage of Energy
Cells have only a modest ability to accumulate ATP, the major high-energy molecule in human metabolism. The human body can store energy in various forms, described below.
22.214.171.124 Creatine Phosphate. Most cells, especially muscle, can store a limited amount of energy in the form of creatine phosphate. This is accomplished by a reversible process catalyzed by creatine kinase:
ATP + creatine [??] creatine phosphate + ADP
When a cell's need for energy is at a minimum, the reaction tends toward the right. By contrast, when the cell requires ATP for mechanical work, ion pumping, or as substrate in one biosynthetic pathway or another, the reaction tends to the left, thereby making ATP available.
126.96.36.199 Glycogen. Glycogen is the polymeric, storage form of glucose. Nearly all of the body's glycogen is contained in muscle (approximately 600 g) and liver (approximately 300 g), with small amounts in brain and type II alveolar cells in the lung. Glycogen serves two very different functions in muscle and liver. Liver glycogen is utilized to maintain a constant supply of glucose in the blood. By contrast, muscle glycogen does not serve as a reservoir for blood glucose. Instead, muscle glycogen is broken down when that tissue requires energy, releasing glucose, which is subsequently oxidized to provide energy for muscle work.
188.8.131.52 Fat or Triacylglycerol. Whereas the body's capacity to store energy in the form of glycogen is limited, its capacity for fat storage is almost limitless. After a meal, excess dietary carbohydrates are metabolized to fatty acids in the liver. Whereas some of these endogenously synthesized fatty acids, as well as some of the fatty acids obtained through the digestion of dietary fat, are used directly as fuel by peripheral tissues, most of these fatty acids are stored in adipocytes in the form of triacylglycerols. When additional metabolic fuel is required during periods of fasting or exercise, the triacylglycerol stores in adipose are mobilized and the fatty acids are made available to tissues such as muscle and liver.
1.2.5 Excretion of Potentially Harmful Substances
184.108.40.206 Urea Cycle. This metabolic pathway takes place in the liver and synthesizes urea from the ammonia (ammonium ions) derived from the catabolism of amino acids and pyrimidines. Urea synthesis is one of the body's major mechanisms for detoxifying and excreting ammonia.
220.127.116.11 Bile Acid Synthesis. Metabolism of cholesterol to bile acids in the liver serves two purposes: (1) it provides the intestine with bile salts, whose emulsifying properties facilitate fat digestion and absorption, and (2) it is a mechanism for disposing of excess cholesterol. Humans cannot break open any of the four rings of cholesterol, nor can they oxidize cholesterol to carbon dioxide and water. Thus, biliary excretion of cholesterol-both as cholesterol per se and as bile salts-is the only mechanism the body has for disposing of significant quantities of cholesterol.
18.104.22.168 Heme Catabolism. When heme-containing proteins (e.g., hemoglobin, myoglobin) and enzymes (e.g., catalase) are turned over, the heme moiety is oxidized to bilirubin, which after conjugation with glucuronic acid is excreted via the hepatobiliary system.
1.2.6 Generation of Regulatory Substances
Metabolic pathways generate molecules that play key regulatory roles. As indicated above, citric acid (produced in the TCA cycle) plays a major role in coordinating the activities of the pathways of glycolysis and gluconeogenesis. Another example of a regulatory molecule is 2,3-bisphosphoglyceric acid, which is produced in a side reaction off the glycolytic pathway and modulates the affinity of hemoglobin for oxygen.
1.3 GENERAL PRINCIPLES COMMON TO METABOLIC PATHWAYS
1.3.1 ATP Provides Energy for Synthesis
Anabolic or synthetic pathways require input of energy in the form of the high-energy bonds of ATP, which is generated directly during some catabolic reactions (such as glycolysis) as well as during mitochondrial oxidative phosphorylation.
1.3.2 Many Metabolic Reactions Involve Oxidation or Reduction
During catalysis, oxidative reactions transfer reducing equivalents (hydrogen atoms) to cofactors such as [NAD.sup.+], [NADP.sup.+] (nicotinamide-adenine dinucleotide phosphate) or FAD. Reduced NADH and [FADH.sub.2] can then be used to generate ATP through oxidative phosphorylation in mitochondria. NADPH is the main source of reducing equivalents for anabolic, energy-requiring pathways such as fatty acid and cholesterol synthesis.
1.3.3 Only Certain Metabolic Reactions Occur in Human Metabolism
It is important to appreciate that although humans possess the machinery to interconvert many dietary components, not all interconversions are possible. Thus, humans can convert glucose into long-chain fatty acids, but they cannot convert even-carbon-numbered long-chain fatty acids into glucose (Fig. 1-3).
1.3.4 Some Organic Molecules Are Nutritionally Essential to Human Health
Certain key cellular components cannot be synthesized in the body and must therefore be provided preformed in the diet and are therefore designated as essential. These molecules include two polyunsaturated fatty acids (linoleic and [alpha]-linolenic) and the carbon skeletons of some of the amino acids. They also include the vitamins (such as thiamine and niacin), most of which serve as components of enzymatic cofactors. By contrast, other important compounds, such as glucose and palmitic acid, are not essential in the diet. Glucose, whose blood levels are crucial to homeostasis, can be synthesized from glycerol, lactate, pyruvate, and the carbon skeletons of glucogenic amino acids when dietary glucose is not available.
1.3.5 Some Metabolic Pathways Are Irreversible or Contain Irreversible Steps
One example of an irreversible pathway is glycolysis, the multistep catabolic pathway that oxidizes glucose to pyruvate or lactate. Gluconeogenesis is essentially the reverse of glycolysis and is the process by which pyruvate (or a number of other molecules such as lactate and the carbon skeleton of the amino acid alanine) can be used to synthesized glucose. Although glycolysis and gluconeogenesis share many enzymes, specific gluconeogenic enzymes are required to bypass the steps in glycolysis that are irreversible under physiological conditions.
1.3.6 Metabolic Pathways Are Interconnected
The initial step in glycolysis is the phosphorylation of glucose to form glucose 6-phosphate. Glucose 6-phosphate is also utilized in two other key metabolic pathways: glycogen synthesis and the pentose phosphate pathway (a.k.a. the hexose monophosphate shunt), which generates ribose 5-phosphate and NADPH.
1.3.7 Metabolic Pathways Are Not Necessarily Linear
Both the tricarboxylic acid (TCA) cycle and the urea cycle are circular pathways. In each case the pathway is initiated by addition of a small molecule to a key metabolic intermediate (oxaloacetate in the TCA cycle and ornithine in the urea cycle). At the end of one cycle, the key intermediate is regenerated and available to participate in another turn of the cycle. Although the TCA and urea cycles can be depicted as simple circular pathways, metabolites can enter into-or be removed from-the pathways at intermediate steps. For example, the amino acid glutamate can be used to generate [alpha]-ketoglutarate, a key intermediate in the TCA cycle.
1.3.8 Metabolic Pathways Are Localized to Specific Compartments Within the Cell
Many metabolic pathways occur within the mitochondria, including ß-oxidation of fatty acids, the TCA cycle, and oxidative phosphorylation (Fig. 1-4). Other pathways are cytosolic, including glycolysis, the pentose phosphate pathway, and fatty acid synthesis. Still others, including the urea cycle and heme synthesis, utilize both mitochondrial and cytosolic enzymes at different points in the pathways.
1.3.9 A Different Repertoire of Pathways Occurs in Different Organs
All cells are capable of oxidizing glucose to pyruvate via glycolysis to generate ATP. However, since red blood cells lack mitochondria, they cannot further oxidize the resulting pyruvate to C[O.sub.2] and water via pyruvate dehydrogenase and the TCA cycle. Instead, the pyruvate is converted to lactate and released from the red blood cells.
Most cells and organs can also utilize fatty acids as fuels. Although neural cells do containmitochondria, they do not oxidize fatty acids. The brain is therefore dependent on a constant supply of glucose to provide energy. The gluconeogenesis pathway that provides glucose for the brain occurs in the liver and to a lesser extent in the renal cortex.
Excerpted from Medical Biochemistry by Miriam D. Rosenthal Robert H. Glew Copyright © 2009 by John Wiley & Sons, Inc.. Excerpted by permission.
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